FastQCFastQC Report
Wed 15 Feb 2023
EGAF00003681435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003681435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128922375
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN39299403.048299412728008No Hit
GAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATATCTCGTATGCCGT1347060.10448612973504405TruSeq Adapter, Index 7 (96% over 31bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)