FastQCFastQC Report
Wed 11 May 2022
EGAF00003681690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003681690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4251770
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG57060.1342029319553974No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA45720.10753168680337835No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT44370.10435653857099514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)