FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003682020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5302195
Sequences flagged as poor quality0
Sequence length35-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN196710.3709972945167049No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT113420.21391140838841272No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60000.11316068156678508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)