FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003682275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5305822
Sequences flagged as poor quality0
Sequence length35-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG309810.5839057548481649No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN215730.40659109936217236No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG85090.16037100377660615No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC73610.13873439402980348No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC71620.13498379704407726No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA61300.11553346493719541No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC60020.11312102064486898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)