FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003682289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44522
Sequences flagged as poor quality0
Sequence length35-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT950.21337765599029695No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA780.17519428597098063No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT590.13251875477292124No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT580.1302726741835497No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN540.12128835182606353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)