FastQCFastQC Report
Wed 8 May 2024
EGAF00003682417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2274996
Total Bases170.4 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT189680.8337597077093762No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN91040.400176527782906No Hit
TGTGTTGGGTGTGTTTGATGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT32280.1418903593676648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)