FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003682432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61148
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1051717.19925426833257No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA2260.3695950807875973No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA1530.2502125989402761No Hit
CAAACACACCCAACACACCAAACACACCCAACACA1520.24857722247661412No Hit
CCCAACACACCAAACACACCCAACACACCAAACACACCCAACACA690.11284097599267352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)