FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003682433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61148
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1034316.914698763655394No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT2320.3794073395695689No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGG1960.32053378687773926No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGG1420.23222345783999476No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTG1410.23058808137633283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)