FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003682513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2656305
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN301941.136691757911836No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT143960.541955837149725No Hit
TGTGTTGGGTGTGTTTGATGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT27070.10190847813033518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)