FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003682561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5488013
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN566251.0317942031113994No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT173580.31628933823589706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)