FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003682668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166785
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1960611.755253769823424No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA3440.2062535599724196No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA3190.19126420241628445No Hit
CAAACACACCCAACACACCAAACACACCCAACACA3110.18646760799832118No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT1880.1127199688221363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)