FastQCFastQC Report
Thu 8 Sep 2022
EGAF00003682735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4386656
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN384730.8770462055834786No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT251430.5731700867357732No Hit
TGTGTTGGGTGTGTTTGATGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT48690.11099571062786778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)