FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003682754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544571
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN376256.909108270546907No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA5960.109443947621155No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA5930.10889305526735724No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT5550.1019150854525856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)