FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003682866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003682866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28021
Sequences flagged as poor quality0
Sequence length35-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1170.41754398486849154No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN780.2783626565789943No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT500.1784376003711502No Hit
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT460.1641625923414582No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT360.12847507226722815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)