FastQCFastQC Report
Sat 10 Sep 2022
EGAF00003683010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2676955
Sequences flagged as poor quality0
Sequence length35-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT199740.746146274405061No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN123690.4620548346909082No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT115080.42989142514536105No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT109090.4075152552060083No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT35110.13115648189827622No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA31090.116139419601749No Hit
CCTTTATTGGAGTCCATCGACTGATCTGCTAGGAAAAAAAAAAAAAAAAA28630.10694987401730699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)