FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003683204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9180986
Sequences flagged as poor quality0
Sequence length35-76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT270900.29506634690435213No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT127470.13884129656662147No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT121690.13254567646655818No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT109260.11900682562853271No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTG94660.10310439423390907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)