FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003683528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5504668
Sequences flagged as poor quality0
Sequence length35-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT153500.2788542378940928No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG93360.1696015091191694No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT72550.1317972310046673No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN59820.10867140397931355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)