FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003683529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5504668
Sequences flagged as poor quality0
Sequence length35-76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG91890.16693104833933672No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT62530.11359449834213435No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN59730.10850790638054829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)