FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003683587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences200927
Sequences flagged as poor quality0
Sequence length35-76
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN10198450.75674249851936No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT2210.1099901954441165No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)