FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003683662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51739
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1418227.410657337791605No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA1110.2145383559790487No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA1040.20100891010649607No Hit
CAAACACACCCAACACACCAAACACACCCAACACA910.17588279634318404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)