FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003683785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24808
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN534621.54950016123831No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGG580.23379554982263787No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTG360.14511447920025797No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT330.13302160593356982No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGG270.10883585940019348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)