FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003683936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107194
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1281911.958691717820027No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT4190.39088008657200957No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTG1370.12780566076459504No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGG1280.11940966845159244No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGG1210.11287945220814596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)