FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003683991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391606
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN355619.080810814951763No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA6350.16215277600445344No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA5720.14606517775519273No Hit
CAAACACACCCAACACACCAAACACACCCAACACA5420.13840441668411618No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT4310.11005960072113298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)