FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003683992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003683992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391606
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN347588.87575777694928No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT18840.48109579526360674No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGG5480.1399365688983315No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGG5060.12921150339882434No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTG4880.1246150467561784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)