FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003684452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003684452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119846
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1694914.142315972164276No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT1850.15436476811908614No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGG1840.1535303639670911No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGG1490.12432621864726398No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTG1340.11181015636733808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)