FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003684485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003684485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563559
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9175616.28152509320231No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA9810.17407227992100205No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA8650.15348880951240243No Hit
CAAACACACCCAACACACCAAACACACCCAACACA7220.12811435892249082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)