FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003684486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003684486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563559
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN8917615.823720320321385No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT11640.20654447892767216No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGG8770.15561813403742997No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGG7060.12527525955578742No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTG6210.11019254417017563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)