FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003685400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2288630
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN156620.6843395393750846No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT144410.6309888448547821No Hit
TGTGTTGGGTGTGTTTGATGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT23740.10373017919017055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)