FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003685516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1433511
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN155621.0855863680153133No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT103430.7215152168347505No Hit
TGTGTTGGGTGTGTTTGATGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT16780.11705525803429483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)