FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003685528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2292891
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN179540.7830289359590141No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT147310.6424640333971393No Hit
TGTGTTGGGTGTGTTTGATGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT26240.11444067772955627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)