FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003685637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2001627
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN56201228.077758743262354No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT31780.15877083992172367No Hit
CAAACACACCCAACACACCAAACACACCCAACACA31130.1555234816476796No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA25810.1289451031585805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)