FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003685638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2001627
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN47352223.656855148336827No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT82880.41406315961964935No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTG24320.12150115880731026No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)