FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003685651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197919
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3731818.8551882335703No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA3120.15764024676761706No Hit
CAAACACACCCAACACACCAAACACACCCAACACA2840.14349304513462577No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA2750.13894573032402144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)