FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003685693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences271443
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4320315.91604867320211No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA4710.17351709198616283No Hit
CAAACACACCCAACACACCAAACACACCCAACACA3570.13151932449906611No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA3470.1278353098072155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)