FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003685703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences728705
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN15820521.71043151892741No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA15170.2081775203957706No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA14390.19747360042815681No Hit
CAAACACACCCAACACACCAAACACACCCAACACA13570.1862207614878449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)