FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003685788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166605
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4340826.054440142852858No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGG3740.22448305873173074No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGG2760.16566129467903123No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT2700.16205996218600882No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTG2460.14765463221391914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)