FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003685795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88894
Sequences flagged as poor quality0
Sequence length65-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGAGCACACGTCTGAACTCCAGTCACATCTCAGGATCTCGTATGCCGT3110.3498548833442077TruSeq Adapter, Index 15 (97% over 35bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1690.19011406844106463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)