FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003685803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446724
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6892915.429885119223503No Hit
CCCAAACACACCCAACACACCAAACACACCCAACACA7180.16072563820166366No Hit
CCAAACACACCCAACACACCAAACACACCCAACACA5910.13229645150025518No Hit
CAAACACACCCAACACACCAAACACACCCAACACA5130.11483600612458698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)