FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003685804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446724
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6751615.11358243568736No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT9100.2037051960494623No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGG6540.14639911891906413No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGG4920.11013511698498402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)