FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003685848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12896
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4933.822890818858561No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCGGAGAGAGTGTAGATC160.12406947890818859Illumina Single End PCR Primer 1 (97% over 35bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)