FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003685982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003685982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126953
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3478627.40069159452711No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGG2050.16147708206974234No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGG1840.1449355273211346No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTG1810.14257244807133349No Hit
TGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGTTTGGTGTGTTGGGTGTGT1810.14257244807133349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)