FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003686552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003686552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6075604
Sequences flagged as poor quality0
Sequence length35-76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT98120.16149834650184575No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAACTCTACCAATTGGAG95270.1568074548637469No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN85630.1409407196387388No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC82920.1364802577653185No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC75560.12436623585078949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)