FastQCFastQC Report
Sat 13 May 2023
EGAF00003686765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003686765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46645247
Sequences flagged as poor quality0
Sequence length35-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3163780.6782641755546926No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG574140.12308649582239321No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC509860.10930588490612987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)