FastQCFastQC Report
Thu 12 May 2022
EGAF00003686769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003686769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55390533
Sequences flagged as poor quality0
Sequence length35-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA4726440.8532938291097506No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG1015210.18328222261374522No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC759890.1371877031766421No Hit
CCCAGACCAAAGCCAATGCCGGCTCCACCACCGAAACCAAATCCACTCCC652240.11775297414090599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)