FastQCFastQC Report
Sat 11 May 2024
EGAF00003686793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003686793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33282302
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length35-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1334850.4010690125941409No Hit
CTCGTCCAACCAGCTGCCACGTCCTGTAACCAAAAGTGACCGGGATGAAT594370.17858440200440462No Hit
CTCACACTCACGCACACTCGTACTGAGACTCAAGGCCGTCTCCACAACTC438150.13164654295847686No Hit
CTCCGTTGCCCAGGCCCTGGGATCAAACCCTGCCCACCAGCTCCCCTCGT340610.1023396759034276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)