FastQCFastQC Report
Mon 6 May 2024
EGAF00003686829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003686829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50478365
Total Bases5 Gbp
Sequences flagged as poor quality0
Sequence length35-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3076500.6094690269781915No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG986280.19538667704471013No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC660270.13080257254766472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)