FastQCFastQC Report
Fri 1 Jul 2022
EGAF00003686889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003686889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44674052
Sequences flagged as poor quality0
Sequence length35-101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTTGTAGGCCTTTTTGTACAGCCTGTCATTCTGCATCTTCAACACAT665140.1488873227796753No Hit
GTCATCTTGTAGGGTGCGGAAACCCATGTGGTGGCCCAGTTGCTTACGGT606880.13584619546039836No Hit
CTCTCATCACTTCCACAGAACCCTCTGGCAGCCATCCAATACCCTTCAGC595120.13321379488925697No Hit
CTCACTTATTTGCAGAGAATTGGCTTTTGCCAAGACAACTTCTGGAGTGT520620.11653744773364189No Hit
GGTCGTTGTAGGCCTTTTTGTACAGCCTGTCATTCTGCATCTTCAACACA500310.11199118450235944No Hit
CTCATCACTTCCACAGAACCCTCTGGCAGCCATCCAATACCCTTCAGCCA456790.10224951164044846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)