FastQCFastQC Report
Fri 10 May 2024
EGAF00003940284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003940284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27588723
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length98
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAAAAAAAAAAAAAAAAAAA439990.1594818288617418Clontech SMARTer II A Oligonucleotide (100% over 25bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN335110.12146629621095546No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)