FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003940589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003940589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1018712
Sequences flagged as poor quality0
Sequence length20-73
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGGCCCGAATAAAATCGCGCTACCCCGACTGGATACTAGGCCAAATTGGTGAAGAAAGCTAGGGTGATAGG25890.2541444490690205No Hit
GAAGGATGTCAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTC18320.17983492881206858No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14030.13772292856077084No Hit
CGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGG10910.1070960192870998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)