FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003940597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003940597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2372846
Sequences flagged as poor quality0
Sequence length20-73
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGGCCCGAATAAAATCGCGCTACCCCGACTGGATACTAGGCCAAATTGGTGAAGAAAGCTAGGGTGATAGG35990.15167440280574465No Hit
CACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGA28690.12090965869677173No Hit
CGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCACCAGGTTGCCT28600.12053036733104466No Hit
ACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGAA27260.11488314033021949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)